UCSC Cell Browser Data Submission
Project Description
Dataset Name (used in the final internet address for your browser
https://
your-dataset-name
.cells.ucsc.edu/
URL):
This should be a single identifier up to 20 characters and separated by hyphens. Not a long paper title, no uppercase letters, no special characters except hyphens, no dots. Something that can be used in a internet server name. Examples: cortex-dev, hnoca, ms-subcortical-lesions. If the organism is human, no need to add 'human' since this is the default. No need to add the word 'atlas'.
Short Label:
This should be a few whole words with normal uppercasing, not a full paper title, but a minimal label for the dataset. Examples: Human Cortical Development, Human Neural Organoid Cell Atlas, Subcortical Multiple Sclerosis Lesions
Title:
Abstract:
Paste your paper abstract or summarize the dataset’s purpose, tissue, or findings.
Methods:
In a few paragraphs, describe the biological specimen (e.g., organism, tissue type), sample preparation, library preparation, sequencing technology, and key analysis steps.
Submitting multiple datasets as a collection
Check this box if you are submitting multiple related datasets that should appear as a single collection.
Please place your datasets in the order you would like them to appear.
Dataset 1
Label:
Description:
Methods:
Add another dataset
Remove last dataset
Public or Private dataset:
Public
Private
Project Accessions (GEO, PMID, etc):
Please provide any of the following accession numbers. You can add other accession numbers separated by commas in the 'Other' field if necessary. If you don't have them yet, leave them blank.
GEO:
PMID:
Array Express:
SRA Study:
Other (separate multiple values with commas):
Paper URLs:
Please provide any of the following paper URLs.
bioRxiv:
Publication URL:
DOI:
Sample Information
Type to search or add custom entries. Separate multiple values with Enter or comma.
Body Parts:
Organisms:
Diseases:
Life Stages:
Submitter Information
Name:
Email:
Lab:
Institution:
Additional Information
Additional Files (graphical abstract as a .jpg or .png, "quickGenes" file, gene-symbol tables):
Do not upload your dataset files (Seurat RDS, Scanpy h5ad, etc.) here, you will do this at the next step after you submit your project information.
Gene List (Comma-separated, ~15-20 genes):
These are shown as "quick genes" on the left-hand side of the Cell Browser for quick access under the "Gene" tab.
Quick genes are typically featured in a figure or highlighted in your manuscript.
You may also upload this list as a TSV or CSV under "Additional Files" up above.
Submit Dataset
